The Cybar at EMF 2018

The Cybar at EMF 2018

The first themed area at Electromagnetic Field Camp - The Cyberpunk Cybar

Metaballs on the Arty FPGA

Metaballs on the Arty FPGA

I've been working with my friend Will on some FPGA graphics demos. This one draws metaballs - a funky oldskool effect

Sequence classification and labelling for protein loops

Sequence classification and labelling for protein loops

Sequences appear a lot in biology, as you might expect. A and C and T and G, or ASP, GLY, VAL, PRO and many others. Looking for patterns in this data is half of the battle. Looking for patterns in the mountain of data is a herculian task. No wonder we are trying to teach machines to look for patterns.

Hydroponics build with the EMF Tilda badge

Hydroponics build with the EMF Tilda badge

I decided to improve on my old hydroponics setup, with some proper pumps, pipework and the EMF tilda badge.

Attempting to modify e-coli with CRISPR in my bathroom

Attempting to modify e-coli with CRISPR in my bathroom

I figured I'd see what all these wetlab biologists are getting up to and give it a go myself.

Reading ROMs from a scanning electron microscope

Reading ROMs from a scanning electron microscope

For some reason, HacDC has a scanning electron microscope, and it might just work

Protein Loops in Tensorflow - A.I Bio Part 2

Protein Loops in Tensorflow - A.I Bio Part 2

How can we go from a list of amino acids to a full 3D structure, using just a neural network?

Writing a electron microscopy python plugin for ChimeraX

Writing a electron microscopy python plugin for ChimeraX

Electron microscopy data is getting pretty big in the bioinformatics world at the moment. As a side project, I've been porting some EM software to ChimeraX.

Learning how to AI and Biology at the same time - Part 1

Learning how to AI and Biology at the same time - Part 1

I've been spending most of my time these days learning AI and biology. Here's the first part of what I've been up to.

Making a 3D Scanning Dome - Part 2

Making a 3D Scanning Dome - Part 2

The second part of building a 3D scanning dome. This time, we deal with skins and cameras


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